Stem-loop bta-mir-217

Accession

MI0009779

Description

Bos taurus bta-mir-217 precursor miRNA

Literature search

49 open access papers mention bta-mir-217
(387 sentences)

Sequence

2427 reads, 1.0 reads per million, 137 experiments

aauauaauuaacacagaguuuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAUaagaaucggucacCAUCAGUUCCUCAUGCAUUGCCUucagcaucuaaacaag
.................((((..(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).))))).))))...

Structure

aauauaauuaacacaga    uu     c c  a  C     C          U -   aag 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
                 ||||  ||||| | || || ||||| |||||||||| | |||    
                 caaa  cuacg c UC GU ACGUA UCCUUGACUA c cug   a
--------------gaa    -u     a u  C  U     C          C a   gcu 

Annotation confidence High

Genome context

11: 38628452-38628561 [-]

Mature bta-miR-217-5p

• Accession: MIMAT0009267
• Description: Bos taurus bta-miR-217-5p mature miRNA
• Sequence: 35 - UACUGCAUCAGGAACUGAUUGGAU - 58
• Evidence: not_experimental

Mature bta-miR-217-3p

• Accession: MIMAT0050836
• Description: Bos taurus bta-miR-217-3p mature miRNA
• Sequence: 72 - CAUCAGUUCCUCAUGCAUUGCCU - 94
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125