Stem-loop bta-mir-628

Accession

MI0009878

Description

Bos taurus bta-mir-628 precursor miRNA

Literature search

9 open access papers mention bta-mir-628
(55 sentences)

Sequence

18647 reads, 16.0 reads per million, 317 experiments

auagcuguugugucacuuccucAUGCUGACAUAUUUACUAGAGGguaaaauuaauaaccuUCUAGUAAGAGUGGCAGUCGAAgggaagggcucau
........((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).)).

Structure

auagcugu  u   a      -cAU    A   A             aaaa 
        ug guc cuuccu    GCUG CAU UUUACUAGAGGgu    u
        || ||| ||||||    |||| ||| |||||||||||||     
        ac cgg gaaggg    UGAC GUG GAAUGAUCUucca    u
-------u  u   -      AAGC    G   A             auaa 

Annotation confidence High

Genome context

10: 54959645-54959739 [+]

Mature bta-miR-628-5p

• Accession: MIMAT0009356
• Description: Bos taurus bta-miR-628-5p mature miRNA
• Sequence: 23 - AUGCUGACAUAUUUACUAGAGG - 44
• Evidence: not_experimental

Mature bta-miR-628-3p

• Accession: MIMAT0061028
• Description: Bos taurus bta-miR-628-3p mature miRNA
• Sequence: 61 - UCUAGUAAGAGUGGCAGUCGAA - 82
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125