Stem-loop bta-mir-302c

Accession

MI0009794

Description

Bos taurus bta-mir-302c precursor miRNA

Literature search

25 open access papers mention bta-mir-302c
(114 sentences)

Sequence

644 reads, 1.0 reads per million, 62 experiments

ccucugcUUUAACAUGGGGGUACCUGCUguguaaagcaaaagUAAGUGCUUCCAUGUUUCAGUGGagg
((((((((..(((((((((((((.((((.(((...)))..)))).)))))))))))))..))))))))

Structure

        UU             C    -g   a 
ccucugcU  AACAUGGGGGUAC UGCU  ugu  
||||||||  ||||||||||||| ||||  ||| a
ggaGGUGA  UUGUACCUUCGUG AUga  acg  
        CU             A    aa   a 

Annotation confidence High

Genome context

6: 12980357-12980424 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from bta-mir-302c

Mature bta-miR-302c-5p

• Accession: MIMAT0050846
• Description: Bos taurus bta-miR-302c-5p mature miRNA
• Sequence: 8 - UUUAACAUGGGGGUACCUGCU - 28
• Evidence: not_experimental

Mature bta-miR-302c-3p

• Accession: MIMAT0009281
• Description: Bos taurus bta-miR-302c-3p mature miRNA
• Sequence: 43 - UAAGUGCUUCCAUGUUUCAGUGG - 65
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125