Stem-loop bta-mir-454

Accession

MI0009840

Description

Bos taurus bta-mir-454 precursor miRNA

Literature search

20 open access papers mention bta-mir-454
(72 sentences)

Sequence

111188 reads, 30.0 reads per million, 311 experiments

cuguuuauuaccagauccuagaACCCUAUCGAUAUUGUCUCUGCUGuguaaauagcucugagUAGUGCAAUAUUGCUUAUAGGGUUUugguguuugggaagaacaaugggcaug
.(((((....((((((.((((((((((((((((((((((((.(((((....)))))...)))....)))))))))...)))))))))))).))))))...))))).........

Structure

--------c     auua      c            ---         ----   --U     g 
         uguuu    ccagau cuagaACCCUAU   CGAUAUUGU    CUC   GCUGu u
         |||||    |||||| ||||||||||||   |||||||||    |||   |||||  
         acaag    gguuug gguUUUGGGAUA   GUUAUAACG    gag   cgaua a
guacgggua     -aag      u            UUC         UGAU   ucu     a 

Annotation confidence High

Genome context

19: 10111632-10111745 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-454

Mature bta-miR-454-5p

• Accession: MIMAT0061018
• Description: Bos taurus bta-miR-454-5p mature miRNA
• Sequence: 23 - ACCCUAUCGAUAUUGUCUCUGCUG - 46
• Evidence: not_experimental

Mature bta-miR-454-3p

• Accession: MIMAT0009326
• Description: Bos taurus bta-miR-454-3p mature miRNA
• Sequence: 63 - UAGUGCAAUAUUGCUUAUAGGGUUU - 87
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125