Stem-loop bta-mir-496

Accession

MI0009850

Description

Bos taurus bta-mir-496 precursor miRNA

Literature search

9 open access papers mention bta-mir-496
(17 sentences)

Sequence

2187 reads, 3.0 reads per million, 228 experiments

ccgagucggguacucgaauggaGGUUGUCCAUGGUGUGUUCAUUuuauuuaugaUGAGUAUUACAUGGCCAAUCUCcuuucaguacuaaauucuucauggg
..((((..((((((.(((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))..))))........

Structure

------cc    cg      c   u        U     GU         uua 
        gagu  gguacu gaa ggaGGUUG CCAUG  GUGUUCAUU   u
        ||||  |||||| ||| |||||||| |||||  |||||||||    
        cuua  ucauga cuu cCUCUAAC GGUAC  UAUGAGUag   u
ggguacuu    aa      -   u        C     AU         uau 

Annotation confidence High

Genome context

21: 65949516-65949616 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from bta-mir-496

Mature bta-miR-496-5p

• Accession: MIMAT0050873
• Description: Bos taurus bta-miR-496-5p mature miRNA
• Sequence: 23 - GGUUGUCCAUGGUGUGUUCAUU - 44
• Evidence: experimental ; Array [3], qRT-PCR [3]

Mature bta-miR-496-3p

• Accession: MIMAT0009336
• Description: Bos taurus bta-miR-496-3p mature miRNA
• Sequence: 55 - UGAGUAUUACAUGGCCAAUCUC - 76
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125