Stem-loop bta-mir-328

Accession

MI0009800

Description

Bos taurus bta-mir-328 precursor miRNA

Literature search

44 open access papers mention bta-mir-328
(253 sentences)

Sequence

294465 reads, 112.0 reads per million, 321 experiments

cuguuucggagccuggagcgGGGGGGCAGGAGGGGCUCAGGGagauagugugugcugcccCUGGCCCUCUCUGCCCUUCCGUccccuguucc
.......(((((..((.(((((((((((((.(((((.(((((.(.((((....))))))))))))))).))))))))))))).))..)))))

Structure

cuguuuc     cu  a             A     U     a a    g 
       ggagc  gg gcgGGGGGGCAGG GGGGC CAGGG g uagu u
       |||||  || ||||||||||||| ||||| ||||| | ||||  
       ccuug  cc UGCCUUCCCGUCU UCCCG GUCcc c gucg g
-------     uc  c             C     -     - -    u 

Annotation confidence Medium

Genome context

18: 34837717-34837808 [-]

Mature bta-miR-328-5p

• Accession: MIMAT0050850
• Description: Bos taurus bta-miR-328-5p mature miRNA
• Sequence: 21 - GGGGGGCAGGAGGGGCUCAGGG - 42
• Evidence: not_experimental

Mature bta-miR-328-3p

• Accession: MIMAT0009287
• Description: Bos taurus bta-miR-328-3p mature miRNA
• Sequence: 61 - CUGGCCCUCUCUGCCCUUCCGU - 82
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125