Stem-loop bta-mir-493

Accession

MI0009847

Description

Bos taurus bta-mir-493 precursor miRNA

Literature search

14 open access papers mention bta-mir-493
(77 sentences)

Sequence

1164686 reads, 488.0 reads per million, 310 experiments

cuggcccccagggccUUGUACAUGGUAGGCUUUCAUUcauucguuugcacauucggUGAAGGUCUACUGUGUGCCAGGcccugugccag
(((((...((((((((.((((((((((((((((((((.................)))))))))))))))))))).)))))))).)))))

Structure

     ccc        U                    cauucgu 
cuggc   cagggccU GUACAUGGUAGGCUUUCAUU       u
|||||   |||||||| ||||||||||||||||||||       u
gaccg   gucccGGA CGUGUGUCAUCUGGAAGUgg       g
     --u        C                    cuuacac 

Annotation confidence High

Genome context

21: 65766680-65766768 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-493

Mature bta-miR-493-5p

• Accession: MIMAT0061022
• Description: Bos taurus bta-miR-493-5p mature miRNA
• Sequence: 16 - UUGUACAUGGUAGGCUUUCAUU - 37
• Evidence: not_experimental

Mature bta-miR-493-3p

• Accession: MIMAT0009333
• Description: Bos taurus bta-miR-493-3p mature miRNA
• Sequence: 57 - UGAAGGUCUACUGUGUGCCAGG - 78
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125