Stem-loop bta-mir-671

Accession

MI0009887

Description

Bos taurus bta-mir-671 precursor miRNA

Literature search

17 open access papers mention bta-mir-671
(70 sentences)

Sequence

61996 reads, 26.0 reads per million, 320 experiments

gccgccgaccuggcaggccaggaagaggAGGAAGCCCUGGAGGGGCUGGAGgugauggauguuuuccUCCGGUUCUCAGGGCUCCACCUUuuccgggccguggagccagggcuggugc
..(((((.((((((.((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).)))).....))))))..))))).

Structure

gc     -a      ----a    a        A   A      GA           u  ug 
  cgccg  ccuggc     ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGg ga  g
  |||||  ||||||     |||| |||||||| ||| ||||||  ||||||||||| ||  a
  guggu  ggaccg     ccgg ccuuUUCC CCU CGGGAC  UCUUGGCCUcc uu  u
-c     cg      aggug    g        A   -      --           u  ug 

Annotation confidence High

Genome context

4: 113815894-113816011 [+]

Mature bta-miR-671-5p

• Accession: MIMAT0009365
• Description: Bos taurus bta-miR-671-5p mature miRNA
• Sequence: 29 - AGGAAGCCCUGGAGGGGCUGGAG - 51
• Evidence: not_experimental

Mature bta-miR-671-3p

• Accession: MIMAT0061029
• Description: Bos taurus bta-miR-671-3p mature miRNA
• Sequence: 68 - UCCGGUUCUCAGGGCUCCACCUU - 90
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125