Stem-loop bta-mir-196a-2

Accession

MI0009766

Description

Bos taurus bta-mir-196a-2 precursor miRNA

Literature search

25 open access papers mention bta-mir-196a-2
(113 sentences)

Sequence

162344 reads, 133.0 reads per million, 194 experiments

agcugaucuguggcuUAGGUAGUUUCAUGUUGUUGGGAuugaguuuugaacUCGGCAACAAGAAACUGCCUGAGuuacaucaguc
.(((((..((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))))))).

Structure

a     uc                  A          A  gag 
 gcuga  uguggcuUAGGUAGUUUC UGUUGUUGGG uu   u
 |||||  |||||||||||||||||| |||||||||| ||    
 ugacu  acauuGAGUCCGUCAAAG ACAACGGCUc aa   u
c     --                  A          -  guu 

Annotation confidence High

Genome context

5: 26040793-26040877 [-]

Mature bta-miR-196a-5p

• Accession: MIMAT0009255
• Description: Bos taurus bta-miR-196a-5p mature miRNA
• Sequence: 16 - UAGGUAGUUUCAUGUUGUUGGGA - 38
• Evidence: not_experimental

Mature bta-miR-196a-2-3p

• Accession: MIMAT0060996
• Description: Bos taurus bta-miR-196a-2-3p mature miRNA
• Sequence: 52 - UCGGCAACAAGAAACUGCCUGAG - 74
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125