Stem-loop bta-mir-449b

Accession

MI0009835

Description

Bos taurus bta-mir-449b precursor miRNA mir-449

Gene
family

RF00711; mir-449

Literature search

24 open access papers mention bta-mir-449b
(96 sentences)

Sequence

903 reads, 1.0 reads per million, 180 experiments

ugaccugaaucagguAGGCAGUGUAUUGUUAGCUGGCUgcuuugggucaauucagCAGCCACAACUGCCCUGCCACUugcuucuggauaaauucuucu
...((.(((.(((((.(((((.(((..(((.(.((((((((............))))))))))))))).)))))))))).))).))............

Structure

---------uga  u   u     A     U   UU   A C        uuggg 
            cc gaa caggu GGCAG GUA  GUU G UGGCUgcu     u
            || ||| ||||| ||||| |||  ||| | ||||||||      
            gg cuu guUCA CCGUC CGU  CAA C ACCGACga     c
ucuucuuaaaua  u   c     -     C   --   - -        cuuaa 

Annotation confidence High

Genome context

20: 23943192-23943289 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-449b

Mature bta-miR-449b-5p

• Accession: MIMAT0009321
• Description: Bos taurus bta-miR-449b-5p mature miRNA
• Sequence: 16 - AGGCAGUGUAUUGUUAGCUGGCU - 38
• Evidence: not_experimental

Mature bta-miR-449b-3p

• Accession: MIMAT0050867
• Description: Bos taurus bta-miR-449b-3p mature miRNA
• Sequence: 56 - CAGCCACAACUGCCCUGCCACU - 77
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125