Stem-loop bta-mir-379

Accession

MI0009820

Description

Bos taurus bta-mir-379 precursor miRNA

Literature search

32 open access papers mention bta-mir-379
(158 sentences)

Sequence

2405300 reads, 854.0 reads per million, 306 experiments

ugguuccugcagagaUGGUAGACUAUGGAACGUAGGcuuugugauuuuugaccUAUGUAACAUGGUCCACUAACucucaguaucca
(((...(((.((((.((((.(((((((..((((((((............).)))))))..))))))).)))).)))))))...)))

Structure

   uuc   c    a    A       GA       - uuugu 
ugg   cug agag UGGU GACUAUG  ACGUAGG c     g
|||   ||| |||| |||| |||||||  ||||||| |      
acc   gac ucuC AUCA CUGGUAC  UGUAUcc g     a
   uau   -    A    C       AA       a uuuuu 

Annotation confidence High

Genome context

21: 65912508-65912593 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from bta-mir-379

Mature bta-miR-379-5p

• Accession: MIMAT0009306
• Description: Bos taurus bta-miR-379-5p mature miRNA
• Sequence: 16 - UGGUAGACUAUGGAACGUAGG - 36
• Evidence: not_experimental

Mature bta-miR-379-3p

• Accession: MIMAT0061010
• Description: Bos taurus bta-miR-379-3p mature miRNA
• Sequence: 54 - UAUGUAACAUGGUCCACUAAC - 74
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125