Stem-loop bta-mir-653

Accession

MI0009880

Description

Bos taurus bta-mir-653 precursor miRNA

Literature search

1 open access papers mention bta-mir-653
(1 sentences)

Sequence

3 reads, 1 reads per million, 3 experiments

ucauucccucaGUGUUGAAACAAUCUCUGUUGaaccauguuacaggaaguucacuggaguuuguuucaacauuggaggaaugauaagaug
(((((((.(((((((((((((((.(((((.(((((.............))))).))))).))))))))))))))).))))))).......

Structure

-------       c               U     U     caugu 
       ucauucc ucaGUGUUGAAACAA CUCUG UGaac     u
       ||||||| ||||||||||||||| ||||| |||||     a
       aguaagg gguuacaacuuuguu gaggu acuug     c
guagaau       a               u     c     aagga 

Annotation confidence Not enough data

Genome context

chr4: 10717971-10718060 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-653

Mature bta-miR-653

• Accession: MIMAT0009358
• Description: Bos taurus bta-miR-653 mature miRNA
• Sequence: 12 - GUGUUGAAACAAUCUCUGUUG - 32
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125