Stem-loop bta-mir-653

Accession

MI0009880

Description

Bos taurus bta-mir-653 precursor miRNA

Literature search

5 open access papers mention bta-mir-653
(5 sentences)

Sequence

1976 reads, 37.0 reads per million, 57 experiments

ucauucccucagUGUUGAAACAAUCUCUGUUGAAccauguuacaggaaguuCACUGGAGUUUGUUUCAACAUUggaggaaugauaagaug
(((((((.(((((((((((((((.(((((.(((((.............))))).))))).))))))))))))))).))))))).......

Structure

-------       c               U     U     caugu 
       ucauucc ucagUGUUGAAACAA CUCUG UGAAc     u
       ||||||| ||||||||||||||| ||||| |||||     a
       aguaagg ggUUACAACUUUGUU GAGGU ACuug     c
guagaau       a               U     C     aagga 

Annotation confidence High

Genome context

4: 10822201-10822290 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-653

Mature bta-miR-653-5p

• Accession: MIMAT0050881
• Description: Bos taurus bta-miR-653-5p mature miRNA
• Sequence: 13 - UGUUGAAACAAUCUCUGUUGAA - 34
• Evidence: not_experimental

Mature bta-miR-653-3p

• Accession: MIMAT0009358
• Description: Bos taurus bta-miR-653-3p mature miRNA
• Sequence: 52 - CACUGGAGUUUGUUUCAACAUU - 73
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125