Stem-loop bta-mir-187

Accession

MI0009759

Description

Bos taurus bta-mir-187 precursor miRNA

Literature search

20 open access papers mention bta-mir-187
(42 sentences)

Sequence

8699 reads, 8.0 reads per million, 180 experiments

ggccgggcuccccacgacacggugugagaccucggGCUACAACACGGGACCCGGGCGcugcuccgaccccUCGUGUCUUGUGUUGCAGCCGGagggacgcaaguccgca
.((.(((((.............((((...((((.((((.((((((((((((.(((((......)).)))...).))))))))))).)))).))))..))))))))))).

Structure

g  c     ccccacgacacgg    aga    g    A           - --C   -  cu 
 gc gggcu             ugug   ccuc gGCU CAACACGGGAC C   GGG CG  g
 || |||||             ||||   |||| |||| ||||||||||| |   ||| ||   
 cg ccuga             acgc   ggaG CCGA GUUGUGUUCUG G   ccc gc  c
a  -     -------------    -ag    G    C           U CUc   a  cu 

Annotation confidence High

Genome context

24: 21219284-21219392 [+]

Mature bta-miR-187-5p

• Accession: MIMAT0050826
• Description: Bos taurus bta-miR-187-5p mature miRNA
• Sequence: 36 - GCUACAACACGGGACCCGGGCG - 57
• Evidence: not_experimental

Mature bta-miR-187-3p

• Accession: MIMAT0009248
• Description: Bos taurus bta-miR-187-3p mature miRNA
• Sequence: 71 - UCGUGUCUUGUGUUGCAGCCGG - 92
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125