Stem-loop bta-mir-449c

Accession

MI0009836

Description

Bos taurus bta-mir-449c precursor miRNA mir-449

Gene
family

RF00711; mir-449

Literature search

7 open access papers mention bta-mir-449c
(17 sentences)

Sequence

113 reads, 11 reads per million, 37 experiments

augaagcuugaaugugucagguAGGCAGUGCAUCUCUAGCUGGcuguuaaaauuucuuuuuaacaguugcuaguugcacuccccucuguugcauucauaaucuugc
...(((..(((((((..((((..((.((((((...(((((.(((((((((((.....)))))))))))))))).))))))))..))))..)))))))....)))..

Structure

aug   --cu       gu    uA  C      UCU     U           u 
   aag    ugaaugu  cagg  GG AGUGCA   CUAGC GGcuguuaaaa u
   |||    |||||||  ||||  || ||||||   ||||| ||||||||||| u
   uuc    acuuacg  gucu  cc ucacgu   gaucg uugacaauuuu c
-cg   uaau       uu    cc  -      --u     -           u 

Annotation confidence Not enough data

Genome context

chr20: 24042743-24042848 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-449c

Mature bta-miR-449c

• Accession: MIMAT0009322
• Description: Bos taurus bta-miR-449c mature miRNA
• Sequence: 23 - AGGCAGUGCAUCUCUAGCUGG - 43
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125