Stem-loop bta-mir-154a

Accession

MI0009751

Description

Bos taurus bta-mir-154a precursor miRNA

Literature search

9 open access papers mention bta-mir-154a
(56 sentences)

Sequence

14985 reads, 8.0 reads per million, 247 experiments

gcggaacuugaagaUAGGUUAUCCGUGUAGCCUUCGcuuuacuugugacgAAUCAUACACGGUUCACCUAUUuuuuaguaccaa
..((.(((.((((((((((...(((((((...(((((.........).))))...)))))))...)))))))))).))).))..

Structure

gc  a   u          UAU       GCC    - uuu 
  gg acu gaagaUAGGU   CCGUGUA   UUCG c   a
  || ||| ||||||||||   |||||||   |||| |   c
  cc uga uuuUUAUCCA   GGCACAU   AAgc g   u
aa  a   u          CUU       ACU    a ugu 

Annotation confidence High

Genome context

21: 65948686-65948769 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from bta-mir-154a

Mature bta-miR-154a-5p

• Accession: MIMAT0009240
• Description: Bos taurus bta-miR-154a-5p mature miRNA
• Sequence: 15 - UAGGUUAUCCGUGUAGCCUUCG - 36
• Evidence: not_experimental

Mature bta-miR-154a-3p

• Accession: MIMAT0060990
• Description: Bos taurus bta-miR-154a-3p mature miRNA
• Sequence: 51 - AAUCAUACACGGUUCACCUAUU - 72
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125