Stem-loop bta-mir-216a

Accession

MI0009777

Description

Bos taurus bta-mir-216a precursor miRNA

Literature search

26 open access papers mention bta-mir-216a
(125 sentences)

Sequence

489 reads, 1.0 reads per million, 134 experiments

gauggcugugaguuggcuUAAUCUCAGCUGGCAACUGUGAgauguucauacaguccucCACAGUGGUCUCUGGGAUUAUGcuaaacagagcaaucuccuugcccucaug
(((.(((.((..(((((.(((((((((..(((.((((((((.(((....)))...)).)))))).))).))))))))).))))).)).))).)))..............

Structure

--------------   g   g  ag     u         CU   A      -  --a   u 
              gau gcu ug  uuggc UAAUCUCAG  GGC ACUGUG Ag   ugu c
              ||| ||| ||  ||||| |||||||||  ||| |||||| ||   |||  
              cua cga ac  aaucG AUUAGGGUC  CUG UGACAC uc   aca a
guacucccguuccu   a   g  -a     U         -U   G      c  cug   u 

Annotation confidence High

Genome context

11: 38640690-38640798 [-]

Mature bta-miR-216a-5p

• Accession: MIMAT0009265
• Description: Bos taurus bta-miR-216a-5p mature miRNA
• Sequence: 19 - UAAUCUCAGCUGGCAACUGUGA - 40
• Evidence: not_experimental

Mature bta-miR-216a-3p

• Accession: MIMAT0050834
• Description: Bos taurus bta-miR-216a-3p mature miRNA
• Sequence: 59 - CACAGUGGUCUCUGGGAUUAUG - 80
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125