Stem-loop bta-mir-346

Accession

MI0009810

Description

Bos taurus bta-mir-346 precursor miRNA

Literature search

15 open access papers mention bta-mir-346
(85 sentences)

Sequence

1426 reads, 2.0 reads per million, 169 experiments

ggucucuguguugggcgucUGUCUGCCCGCAUGCCUGCCUCUcuguugcucugaaggAGGCAGGGGCUGGGCUUGCAGcugccugggcagagcgg
.(.((((((..((((((.((((..((((((...((((((((.((..........)))))))))).)).))))..)))).)))))).)))))))..

Structure

-g u      gu      u    CU    -  AUG        U  guug 
  g cucugu  ugggcg cUGU  GCCC GC   CCUGCCUC cu    c
  | ||||||  |||||| ||||  |||| ||   |||||||| ||     
  c gagacg  guccgu GACG  CGGG CG   GGACGGAg ga    u
gg -      -g      c    UU    U  --G        -  aguc 

Annotation confidence High

Genome context

28: 41000073-41000167 [-]

Mature bta-miR-346-5p

• Accession: MIMAT0009297
• Description: Bos taurus bta-miR-346-5p mature miRNA
• Sequence: 20 - UGUCUGCCCGCAUGCCUGCCUCU - 42
• Evidence: not_experimental

Mature bta-miR-346-3p

• Accession: MIMAT0050856
• Description: Bos taurus bta-miR-346-3p mature miRNA
• Sequence: 58 - AGGCAGGGGCUGGGCUUGCAG - 78
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125