Stem-loop bta-mir-377

Accession

MI0009818

Description

Bos taurus bta-mir-377 precursor miRNA

Literature search

30 open access papers mention bta-mir-377
(216 sentences)

Sequence

4283 reads, 3.0 reads per million, 241 experiments

uugagcAGAGGUUGCCCUUGGUGAAUUCgcuuuauuuauguugaAUCACACAAAGGCAACUUUUGUUug
..((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).

Structure

uu              C   -    A    - uuu 
  gagcAGAGGUUGCC UUG GUGA UUCg c   a
  |||||||||||||| ||| |||| |||| |   u
  uUUGUUUUCAACGG AAC CACU Aagu g   u
-g              A   A    -    u uau 

Annotation confidence High

Genome context

21: 65951137-65951205 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from bta-mir-377

Mature bta-miR-377-5p

• Accession: MIMAT0061008
• Description: Bos taurus bta-miR-377-5p mature miRNA
• Sequence: 7 - AGAGGUUGCCCUUGGUGAAUUC - 28
• Evidence: not_experimental

Mature bta-miR-377-3p

• Accession: MIMAT0009304
• Description: Bos taurus bta-miR-377-3p mature miRNA
• Sequence: 45 - AUCACACAAAGGCAACUUUUGUU - 67
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125