Stem-loop bta-mir-302d

Accession

MI0009792

Description

Bos taurus bta-mir-302d precursor miRNA

Literature search

14 open access papers mention bta-mir-302d
(67 sentences)

Sequence

2577 reads, 3.0 reads per million, 90 experiments

ccucuACUUUAACAUGGAGGCACUUGCUgugacuucauaaaaaaaUAAGUGCUUCCAUGUUUUAGUGCgg
((..((((..((((((((((((((((.((((....))))......))))))))))))))))..)))).))

Structure

  uc    UU                -----C    a 
cc  uACU  AACAUGGAGGCACUUG      Ugug c
||  ||||  ||||||||||||||||      ||||  
gg  GUGA  UUGUACCUUCGUGAAU      auac u
  -C    UU                aaaaaa    u 

Annotation confidence High

Genome context

6: 12980945-12981014 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from bta-mir-302d

Mature bta-miR-302d-5p

• Accession: MIMAT0050844
• Description: Bos taurus bta-miR-302d-5p mature miRNA
• Sequence: 6 - ACUUUAACAUGGAGGCACUUGCU - 28
• Evidence: not_experimental

Mature bta-miR-302d-3p

• Accession: MIMAT0009279
• Description: Bos taurus bta-miR-302d-3p mature miRNA
• Sequence: 46 - UAAGUGCUUCCAUGUUUUAGUGC - 68
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125