Stem-loop bta-mir-541

Accession

MI0009858

Description

Bos taurus bta-mir-541 precursor miRNA

Literature search

13 open access papers mention bta-mir-541
(22 sentences)

Sequence

61700 reads, 47.0 reads per million, 306 experiments

acgucagggAAAGGAUUCUGCUGUCGGUCCCACUccaaaguucaaaaaaugggUGGUGGGCACAGAAUCCGGCCUcugcuugug
(((.(((((...((((((((.((((.(..((((.(((............)))))))).))))))))))))...)))))..))).

Structure

-   -u     AAA        C    G UC    U   aaguu 
 acg  caggg   GGAUUCUG UGUC G  CCAC cca     c
 |||  |||||   |||||||| |||| |  |||| |||      
 ugu  gucUC   CCUAAGAC ACGG U  GGUg ggu     a
g   uc     CGG        -    G --    -   aaaaa 

Annotation confidence High

Genome context

21: 65952991-65953074 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from bta-mir-541

Mature bta-miR-541-5p

• Accession: MIMAT0061024
• Description: Bos taurus bta-miR-541-5p mature miRNA
• Sequence: 10 - AAAGGAUUCUGCUGUCGGUCCCACU - 34
• Evidence: experimental ; Array [3], qRT-PCR [3]

Mature bta-miR-541-3p

• Accession: MIMAT0009343
• Description: Bos taurus bta-miR-541-3p mature miRNA
• Sequence: 54 - UGGUGGGCACAGAAUCCGGCCU - 75
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125