Stem-loop bta-mir-105b

Accession

MI0009722

Description

Bos taurus bta-mir-105b precursor miRNA

Literature search

2 open access papers mention bta-mir-105b
(2 sentences)

Sequence

787 reads, 2.0 reads per million, 166 experiments

ugugcaucguggUCAAAUGCUCAGACUCCUUGGUggcugcuuaugcaCCAUGGAUGUUUGAGCAUGUGCUauggugucua
...(((((((((.((.(((((((((((((.(((((..........))))).))).)))))))))).)))))))))))...

Structure

ugu         U  A          -   U     gcug 
   gcaucgugg CA AUGCUCAGAC UCC UGGUg    c
   ||||||||| || |||||||||| ||| |||||     
   ugugguaUC GU UACGAGUUUG AGG ACCac    u
auc         -  G          U   U     guau 

Annotation confidence High

Genome context

X: 34769258-34769337 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-105b

Mature bta-miR-105b-5p

• Accession: MIMAT0009216
• Description: Bos taurus bta-miR-105b-5p mature miRNA
• Sequence: 13 - UCAAAUGCUCAGACUCCUUGGU - 34
• Evidence: not_experimental

Mature bta-miR-105b-3p

• Accession: MIMAT0050809
• Description: Bos taurus bta-miR-105b-3p mature miRNA
• Sequence: 48 - CCAUGGAUGUUUGAGCAUGUGCU - 70
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125