Stem-loop bta-mir-146a

Accession

MI0009746

Description

Bos taurus bta-mir-146a precursor miRNA

Literature search

291 open access papers mention bta-mir-146a
(1679 sentences)

Sequence

5165522 reads, 1751.0 reads per million, 321 experiments

cccauguguauccucagcuuUGAGAACUGAAUUCCAUAGGUUgugucagugucagaCCUGUGAAGUUUAGUUCUUUAGcugggauaucucuaucauccu
.......((((((.(((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).)))))))))))............

Structure

-----cccaugu      u     uU            C        g  uc 
            guaucc cagcu  GAGAACUGAAUU CAUAGGUU ug  a
            |||||| |||||  |||||||||||| |||||||| ||  g
            uauagg gucGA  UUCUUGAUUUGA GUGUCCag ac  u
uccuacuaucuc      -     -U            A        -  ug 

Annotation confidence High

Genome context

7: 72071548-72071646 [+]

Mature bta-miR-146a-5p

• Accession: MIMAT0009236
• Description: Bos taurus bta-miR-146a-5p mature miRNA
• Sequence: 21 - UGAGAACUGAAUUCCAUAGGUU - 42
• Evidence: not_experimental

Mature bta-miR-146a-3p

• Accession: MIMAT0060987
• Description: Bos taurus bta-miR-146a-3p mature miRNA
• Sequence: 57 - CCUGUGAAGUUUAGUUCUUUAG - 78
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125