Stem-loop bta-mir-301a

Accession

MI0009789

Description

Bos taurus bta-mir-301a precursor miRNA

Literature search

36 open access papers mention bta-mir-301a
(225 sentences)

Sequence

177126 reads, 227.0 reads per million, 303 experiments

acugcuaacgaauGCUCUGACUUUAUUGCACUACUguacuuuacagcuagCAGUGCAAUAGUAUUGUCAAAGCAUcugaaagcag
.(((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..)))))

Structure

a     aa  a     C    ---U          A  -  acu 
 cugcu  cg auGCU UGAC    UUAUUGCACU CU gu   u
 |||||  || ||||| ||||    |||||||||| || ||    
 gacga  gu UACGA ACUG    GAUAACGUGA ga cg   u
-     aa  c     A    UUAU          C  u  aca 

Annotation confidence High

Genome context

19: 10121293-10121377 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-301a

Mature bta-miR-301a-5p

• Accession: MIMAT0050841
• Description: Bos taurus bta-miR-301a-5p mature miRNA
• Sequence: 14 - GCUCUGACUUUAUUGCACUACU - 35
• Evidence: not_experimental

Mature bta-miR-301a-3p

• Accession: MIMAT0009276
• Description: Bos taurus bta-miR-301a-3p mature miRNA
• Sequence: 51 - CAGUGCAAUAGUAUUGUCAAAGCAU - 75
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125