Stem-loop bta-mir-1197

Accession

MI0010470

Description

Bos taurus bta-mir-1197 precursor miRNA

Literature search

1 open access papers mention bta-mir-1197
(1 sentences)

Sequence

9069 reads, 9.0 reads per million, 266 experiments

cuuccugguauuugaagacgCGGUUGACCAUGGUGUGUACGcuuuauuuaugacgUAGGACACAUGGUCUACUUCUucucgauaucacaucuucgcc
.....(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..)))))))..........

Structure

-----cuucc       -u     cgC   U       G   -G    - uuu 
          ugguauu  gaaga   GGU GACCAUG UGU  UACG c   a
          |||||||  |||||   ||| ||||||| |||  |||| |   u
          acuauag  cuUCU   UCA CUGGUAC ACA  AUgc g   u
ccgcuucuac       cu     ---   U       -   GG    a uau 

Annotation confidence Medium

Genome context

21: 65915936-65916032 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from bta-mir-1197

Mature bta-miR-1197-5p

• Accession: MIMAT0050902
• Description: Bos taurus bta-miR-1197-5p mature miRNA
• Sequence: 21 - CGGUUGACCAUGGUGUGUACG - 41
• Evidence: not_experimental

Mature bta-miR-1197-3p

• Accession: MIMAT0009966
• Description: Bos taurus bta-miR-1197-3p mature miRNA
• Sequence: 56 - UAGGACACAUGGUCUACUUCU - 76
• Evidence: not_experimental

References

1. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125