Stem-loop bta-mir-412

Accession

MI0009827

Description

Bos taurus bta-mir-412 precursor miRNA

Literature search

5 open access papers mention bta-mir-412
(6 sentences)

Sequence

67423 reads, 38.0 reads per million, 303 experiments

cugggguacaggacggaUGGUCGACCAGUUGGAAAGUAAUuguuucuaauguaCUUCACCUGGUCCACUAGCUGUccguacccacugcag
...((((((.((((((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).)))))))))))).......

Structure

----cug      a      a    C      U   AA    -    u 
       ggguac ggacgg UGGU GACCAG UGG  AGUA AUug u
       |||||| |||||| |||| |||||| |||  |||| ||||  
       cccaug ccUGUC AUCA CUGGUC ACU  UCau uaau u
gacguca      -      G    C      C   --    g    c 

Annotation confidence High

Genome context

21: 65954035-65954124 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from bta-mir-412

Mature bta-miR-412-5p

• Accession: MIMAT0050862
• Description: Bos taurus bta-miR-412-5p mature miRNA
• Sequence: 18 - UGGUCGACCAGUUGGAAAGUAAU - 40
• Evidence: not_experimental

Mature bta-miR-412-3p

• Accession: MIMAT0009313
• Description: Bos taurus bta-miR-412-3p mature miRNA
• Sequence: 54 - CUUCACCUGGUCCACUAGCUGU - 75
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125