Stem-loop bta-mir-135a-1

Accession

MI0009737

Description

Bos taurus bta-mir-135a-1 precursor miRNA

Literature search

8 open access papers mention bta-mir-135a-1
(25 sentences)

Sequence

13775 reads, 20.0 reads per million, 259 experiments

aggccucgcuguucucUAUGGCUUUUUAUUCCUAUGUGAuucuacugcucacucAUAUAGGGAUUGGAGCCGUGGCgcacggcgggggca
.(.(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).))))))))).).

Structure

a g         u u          UU            uucua 
 g ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
 | ||||||||| | ||||||||||  ||||||||||||     u
 c ggggcggca g GGUGCCGAGG  UAGGGAUAUAcu     g
a g         c C          -U            cacuc 

Annotation confidence High

Genome context

22: 48588901-48588990 [+]

Mature bta-miR-135a-5p

• Accession: MIMAT0009228
• Description: Bos taurus bta-miR-135a-5p mature miRNA
• Sequence: 17 - UAUGGCUUUUUAUUCCUAUGUGA - 39
• Evidence: not_experimental

Mature bta-miR-135a-1-3p

• Accession: MIMAT0050815
• Description: Bos taurus bta-miR-135a-1-3p mature miRNA
• Sequence: 55 - AUAUAGGGAUUGGAGCCGUGGC - 76
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125