Stem-loop bta-mir-105a

Accession

MI0009723

Description

Bos taurus bta-mir-105a precursor miRNA

Literature search

3 open access papers mention bta-mir-105a
(3 sentences)

Sequence

2499 reads, 7.0 reads per million, 200 experiments

ugugcaucguagUCAAAUGCUCAGACUCCUGUGGUggcugcucaugcaCCACGGAUGUUUGAGCAUGUGCUacggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure

ugu         U  A          UC        gcug 
   gcaucguag CA AUGCUCAGAC  CUGUGGUg    c
   ||||||||| || ||||||||||  ||||||||     
   uguggcaUC GU UACGAGUUUG  GGCACCac    u
auc         -  G          UA        guac 

Annotation confidence High

Genome context

X: 34766804-34766884 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-105a

Mature bta-miR-105a-5p

• Accession: MIMAT0009217
• Description: Bos taurus bta-miR-105a-5p mature miRNA
• Sequence: 13 - UCAAAUGCUCAGACUCCUGUGGU - 35
• Evidence: not_experimental

Mature bta-miR-105a-3p

• Accession: MIMAT0050810
• Description: Bos taurus bta-miR-105a-3p mature miRNA
• Sequence: 49 - CCACGGAUGUUUGAGCAUGUGCU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125