Stem-loop bta-mir-544a

Accession

MI0009862

Description

Bos taurus bta-mir-544a precursor miRNA

Literature search

6 open access papers mention bta-mir-544a
(64 sentences)

Sequence

6162 reads, 4.0 reads per million, 239 experiments

auuuucaucaccuagggaUCUUGUUAAAAGGCAGAUUCUgauucagggaccaagAUUCUGCAUUUUUAGCAAGUUCccaagugaugcuaau
.....((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..)))))).....

Structure

auuuu      cua    U           -     U   gauuc 
     caucac   ggga CUUGUUAAAAG GCAGA UCU     a
     ||||||   |||| ||||||||||| ||||| |||     g
     guagug   ccCU GAACGAUUUUU CGUCU Aga     g
uaauc      -aa    U           A     U   accag 

Annotation confidence High

Genome context

21: 65937005-65937095 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from bta-mir-544a

Mature bta-miR-544a-5p

• Accession: MIMAT0050879
• Description: Bos taurus bta-miR-544a-5p mature miRNA
• Sequence: 19 - UCUUGUUAAAAGGCAGAUUCU - 39
• Evidence: not_experimental

Mature bta-miR-544a-3p

• Accession: MIMAT0009346
• Description: Bos taurus bta-miR-544a-3p mature miRNA
• Sequence: 55 - AUUCUGCAUUUUUAGCAAGUUC - 76
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125