Stem-loop bta-mir-153-1

Accession

MI0009749

Description

Bos taurus bta-mir-153-1 precursor miRNA

Literature search

7 open access papers mention bta-mir-153-1
(12 sentences)

Sequence

38725 reads, 135.0 reads per million, 242 experiments

cucacggcugccagcGUCAUUUUUGUGAUCUGCAGCUaguauucucacuccagUUGCAUAGUCACAAAAGUGAUCacuggcagguguggc
.(((((.(((((((.((((((((((((((.((((((((((......)))..)))))))..))))))))))))).).))))))).))))).

Structure

c     g       c -             -C       --   au 
 ucacg cugccag G UCAUUUUUGUGAU  UGCAGCU  agu  u
 ||||| ||||||| | |||||||||||||  |||||||  |||   
 ggugu gacgguc C AGUGAAAACACUG  ACGUUga  uca  c
c     g       a U             AU       cc   cu 

Annotation confidence High

Genome context

2: 107240951-107241040 [-]

Mature bta-miR-153-1-5p

• Accession: MIMAT0050821
• Description: Bos taurus bta-miR-153-1-5p mature miRNA
• Sequence: 16 - GUCAUUUUUGUGAUCUGCAGCU - 37
• Evidence: experimental ; Array [3], qRT-PCR [3]

Mature bta-miR-153-3p

• Accession: MIMAT0009239
• Description: Bos taurus bta-miR-153-3p mature miRNA
• Sequence: 54 - UUGCAUAGUCACAAAAGUGAUC - 75
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125