Stem-loop gga-mir-219a

Accession

MI0001246

Description

Gallus gallus gga-mir-219a precursor miRNA

Literature search

5 open access papers mention gga-mir-219a
(14 sentences)

Sequence

109876 reads, 687 reads per million, 5 experiments

cucugcuccUGAUUGUCCAAACGCAAUUCUugugcgcuggagccguacgaaccaagaauugugucuggacaucuguagcagagau
(((((((.(.(((.(((((.(((((((((((((((((....).))))).....))))))))))).)))))))).).)))))))..

Structure

--       c U   U     A           -----     - u 
  cucugcu c GAU GUCCA ACGCAAUUCUu     gugcg c g
  ||||||| | ||| ||||| |||||||||||     ||||| |  
  gagacga g cua caggu uguguuaagaa     caugc g g
ua       u u   -     c           ccaag     c a 

Annotation confidence High

Genome context

chr17: 5485248-5485332 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-219a

Mature gga-miR-219a

• Accession: MIMAT0001170
• Description: Gallus gallus gga-miR-219a mature miRNA
• Sequence: 10 - UGAUUGUCCAAACGCAAUUCU - 30
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004