Stem-loop gga-mir-219a

Accession

MI0001246

Description

Gallus gallus gga-mir-219a precursor miRNA

Literature search

7 open access papers mention gga-mir-219a
(17 sentences)

Sequence

1172496 reads, 833.0 reads per million, 160 experiments

cucugcuccUGAUUGUCCAAACGCAAUUCUUGUGcgcuggagccguacgaaccaAGAAUUGUGUCUGGACAUCUGUAGcagagau
(((((((.(.(((.(((((.(((((((((((((((((....).))))).....))))))))))).)))))))).).)))))))..

Structure

--       c U   U     A           -----     - u 
  cucugcu c GAU GUCCA ACGCAAUUCUU     GUGcg c g
  ||||||| | ||| ||||| |||||||||||     ||||| |  
  gagacGA G CUA CAGGU UGUGUUAAGAa     caugc g g
ua       U U   -     C           ccaag     c a 

Annotation confidence High

Genome context

17: 5623156-5623240 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-219a

Mature gga-miR-219a-5p

• Accession: MIMAT0001170
• Description: Gallus gallus gga-miR-219a-5p mature miRNA
• Sequence: 10 - UGAUUGUCCAAACGCAAUUCUUGUG - 34
• Evidence: experimental ; cloned [1]

Mature gga-miR-219a-3p

• Accession: MIMAT0061073
• Description: Gallus gallus gga-miR-219a-3p mature miRNA
• Sequence: 55 - AGAAUUGUGUCUGGACAUCUGUAG - 78
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004