Stem-loop sma-mir-219

Accession

MI0027193

Description

Schistosoma mansoni sma-mir-219 precursor miRNA

Gene family

MIPF0000044; mir-219

Sequence

aacaaucgauucagUGAUUGUCCAUUCGCAUUUCUUguuagauaauaugaauuauauauuaucaguacuaugauaauauuuaauuuacaAGAGGUGUUGAUGGACAUCauaugaucgauuauu
...((((((((..(((((.(((((((.(((((((((((..........((((((.(((((((((......))))))))).))))))))))))))))).))))))))))))..))))))))...

Structure

aac        ca     U       C           uagauaauau      u         gu 
   aaucgauu  gUGAU GUCCAUU GCAUUUCUUgu          gaauua auauuauca  a
   ||||||||  ||||| ||||||| |||||||||||          |||||| |||||||||   
   uuagcuag  uaCUA CAGGUAG UGUGGAGAaca          uuuaau uauaauagu  c
uua        ua     -       U           ----------      u         au 

Annotation confidence Not enough data

Genome context

Chr_1: 5023926-5024048 [-]

Mature sma-miR-219-5p

• Accession: MIMAT0033504
• Description: Schistosoma mansoni sma-miR-219-5p mature miRNA
• Sequence: 15 - UGAUUGUCCAUUCGCAUUUCUU - 36
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature sma-miR-219-3p

• Accession: MIMAT0033505
• Description: Schistosoma mansoni sma-miR-219-3p mature miRNA
• Sequence: 90 - AGAGGUGUUGAUGGACAUC - 108
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402