Accession
MI0000358
Description
Drosophila melanogaster
dme-mir-219 precursor miRNA mir-219
Gene
family?
family?
RF00251;
mir-219
Literature search
6 open access papers mention dme-mir-219
(7 sentences)
(7 sentences)
Sequence
4871
reads,
256
reads per million, 46 experiments
uaauucgauuuuuagcuaUGAUUGUCCAAACGCAAUUCUuguugauauucaauauucaAGGGUUGCGACUGGGCAUCGCGgcucgaaauaagaauacaac
..((((.(((((.((((.((((.(((((..(((((((((((..(((((...))))))))))))))))..))))))))).)))).)))))..)))).....
..((((.(((((.((((.((((.(((((..(((((((((((..(((((...))))))))))))))))..))))))))).)))).)))))..)))).....
Structure
---ua -g u a U AA uu u
auuc auuuu agcu UGAU GUCCA CGCAAUUCUug gauau
|||| ||||| |||| |||| ||||| ||||||||||| ||||| c
uaag uaaag ucgG GCUA CGGGU GCGUUGGGAac uuaua
caaca aa c C - CA -- a
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence is computationally predicted based on conservation in D. pseudoobscura [1]. The sequence of the excised miR is strikingly conserved in human (MIR:MI0000296), but the expression of the miR has not been confirmed in fly and the precise 5' or 3' ends are unknown.
Genome context
chr3L: 17315006-17315105 [+]
Database links
Mature dme-miR-219-5p
| Accession | MIMAT0000335 |
| Description | Drosophila melanogaster dme-miR-219-5p mature miRNA |
| Sequence | 19 - UGAUUGUCCAAACGCAAUUCU - 39 |
| Evidence |
experimental
454 [2-3], Illumina [3] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-219-3p
| Accession | MIMAT0020803 |
| Description | Drosophila melanogaster dme-miR-219-3p mature miRNA |
| Sequence | 59 - AGGGUUGCGACUGGGCAUCGCG - 80 |
| Evidence | not_experimental |
| Database links |
|
References
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