Stem-loop gga-mir-219b

Accession

MI0015382

Description

Gallus gallus gga-mir-219b precursor miRNA mir-219

Gene
family

RF00251; mir-219

Literature search

6 open access papers mention gga-mir-219b
(15 sentences)

Sequence

109876 reads, 721 reads per million, 5 experiments

aaucucugcuacagauguccagacacaauucuugguucguacggcuccagcgCACAAGAAUUGCGUUUGGACAAucaggagcagagauu
((((((((((...(((((((((((.(((((((((...(((.........)))..))))))))).)))))))).)))...))))))))))

Structure

          aca   -        a         guu   acg 
aaucucugcu   gau guccagac caauucuug   cgu   g
||||||||||   ||| |||||||| |||||||||   |||   c
uuagagacga   cuA CAGGUUUG GUUAAGAAC   gcg   u
          gga   A        C         -AC   acc 

Annotation confidence Not enough data

Genome context

chr17: 5485245-5485333 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-219b

Mature gga-miR-219b

• Accession: MIMAT0016380
• Description: Gallus gallus gga-miR-219b mature miRNA
• Sequence: 53 - CACAAGAAUUGCGUUUGGACAA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512