miRBase entry: 19891781

Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach

PubMed ID 19891781
Authors Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
Journal BMC Genomics
Volume 10
Pages 512

There are 155 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
gga-mir-2188 MI0015374 123 22 2807294 2807462 - High
gga-mir-3523 MI0015375 2 13 8666897 8667062 - High
gga-mir-3524a MI0015376 3 chr1 105832017 105832132 - Low
gga-mir-3526 MI0015377 2 chr3 15593875 15593989 + Low
gga-mir-3528 MI0015379 1 chr17 8208158 8208254 + Low
gga-mir-3529 MI0015380 24 10 13148094 13148184 + Medium
gga-mir-3530 MI0015381 9 7 24883661 24883749 + High
gga-mir-219b MI0015382 721 17 5623153 5623241 - Medium
gga-mir-3531 MI0015383 3 23 817543 817629 - High
gga-mir-3525 MI0015384 119 1 105926199 105926282 + High
gga-mir-3532 MI0015385 16 5 32468300 32468383 - High
gga-mir-3533 MI0015386 4 chr14 4192483 4192566 - Medium
gga-mir-3534 MI0015387 0 34 2427703 2427783 - High
gga-mir-3535 MI0015388 54 chr9 15324645 15324726 - Low
gga-mir-3536 MI0015389 2 25 1911161 1911238 + -
gga-mir-3537 MI0015390 0 6 17704935 17705011 + -
gga-mir-3538 MI0015391 12 1 50734470 50734544 + -
gga-mir-3539 MI0015393 0 1 80817451 80817521 + High
gga-mir-3540 MI0015394 1 10 11084037 11084098 + Medium
hsa-let-7a-1 MI0000060 46519 chr9 94175957 94176036 + High
hsa-let-7a-2 MI0000061 46265 chr11 122146522 122146593 - High
hsa-let-7a-3 MI0000062 46706 chr22 46112749 46112822 + High
hsa-let-7b MI0000063 27396 chr22 46113686 46113768 + High
hsa-let-7c MI0000064 15711 chr21 16539828 16539911 + High
hsa-let-7d MI0000065 4366 chr9 94178834 94178920 + High
hsa-let-7e MI0000066 5118 chr19 51692786 51692864 + High
hsa-let-7f-1 MI0000067 65280 chr9 94176347 94176433 + High
hsa-let-7f-2 MI0000068 65395 chrX 53557192 53557274 - High
hsa-mir-15a MI0000069 3371 chr13 50049119 50049201 - High
hsa-mir-16-1 MI0000070 10398 chr13 50048973 50049061 - High
hsa-mir-17 MI0000071 12840 chr13 91350605 91350688 + High
hsa-mir-18a MI0000072 8032 chr13 91350751 91350821 + High
hsa-mir-19a MI0000073 9302 chr13 91350891 91350972 + High
hsa-mir-19b-1 MI0000074 12712 chr13 91351192 91351278 + High
hsa-mir-19b-2 MI0000075 12558 chrX 134169671 134169766 - High
hsa-mir-20a MI0000076 6826 chr13 91351065 91351135 + High
hsa-mir-21 MI0000077 28570 chr17 59841266 59841337 + High
hsa-mir-24-1 MI0000080 2988 chr9 95086021 95086088 + High
hsa-mir-24-2 MI0000081 3119 chr19 13836287 13836359 - High
hsa-mir-92a-1 MI0000093 7474 chr13 91351314 91351391 + High
hsa-mir-92a-2 MI0000094 7101 chrX 134169538 134169612 - High
hsa-mir-106a MI0000113 2817 chrX 134170198 134170278 - High
hsa-mir-16-2 MI0000115 10575 chr3 160404745 160404825 + High
hsa-mir-181a-2 MI0000269 4211 chr9 124692442 124692551 + High
hsa-mir-181b-1 MI0000270 1441 chr1 198858873 198858982 - High
hsa-mir-181a-1 MI0000289 4186 chr1 198859044 198859153 - High
hsa-mir-221 MI0000298 5088 chrX 45746157 45746266 - High
hsa-mir-222 MI0000299 4867 chrX 45747015 45747124 - High
hsa-mir-223 MI0000300 1820 chrX 66018870 66018979 + High
hsa-let-7g MI0000433 6904 chr3 52268278 52268361 - High
hsa-let-7i MI0000434 7403 chr12 62603686 62603769 + High
hsa-mir-15b MI0000438 5285 chr3 160404588 160404685 + High
hsa-mir-23b MI0000439 4243 chr9 95085208 95085304 + High
hsa-mir-27b MI0000440 4618 chr9 95085445 95085541 + High
hsa-mir-122 MI0000442 3777 chr18 58451074 58451158 + High
hsa-mir-125b-1 MI0000446 5007 chr11 122099757 122099844 - High
hsa-mir-140 MI0000456 8526 chr16 69933081 69933180 + High
hsa-mir-125b-2 MI0000470 5102 chr21 16590237 16590325 + High
hsa-mir-136 MI0000475 338 chr14 100884702 100884783 + High
hsa-mir-146a MI0000477 1682 chr5 160485352 160485450 + High
hsa-mir-150 MI0000479 1228 chr19 49500785 49500868 - High
hsa-mir-206 MI0000490 1819 chr6 52144349 52144434 + -
hsa-mir-155 MI0000681 459 chr21 25573980 25574044 + High
hsa-mir-181b-2 MI0000683 1507 chr9 124693710 124693798 + High
hsa-mir-106b MI0000734 2518 chr7 100093993 100094074 - High
hsa-mir-302a MI0000738 362 chr4 112648183 112648251 - High
hsa-mir-34b MI0000742 437 chr11 111512938 111513021 + High
hsa-mir-34c MI0000743 1301 chr11 111513439 111513515 + High
hsa-mir-302b MI0000772 12 chr4 112648485 112648557 - High
hsa-mir-302c MI0000773 4 chr4 112648363 112648430 - -
hsa-mir-302d MI0000774 4 chr4 112648004 112648071 - -
hsa-mir-367 MI0000775 4 chr4 112647874 112647941 - -
gga-let-7i MI0001168 753 1 33188029 33188112 + High
gga-let-7a-3 MI0001171 73726 1 71281767 71281842 + High
gga-let-7b MI0001172 13203 1 71282596 71282680 + High
gga-let-7c MI0001174 12632 1 99155964 99156047 + High
gga-mir-125b-2 MI0001175 6293 1 99187944 99188033 + High
gga-mir-155 MI0001176 44 1 102588225 102588287 + High
gga-mir-222a MI0001177 415 1 110728187 110728284 + High
gga-mir-221 MI0001178 930 1 110728691 110728789 + High
gga-mir-92-1 MI0001179 1297 1 148016356 148016433 - High
gga-mir-19b-1 MI0001180 125 1 148016469 148016555 - High
gga-mir-20a MI0001181 1777 1 148016592 148016689 - High
gga-mir-19a MI0001182 109 1 148016778 148016858 - High
gga-mir-18a MI0001183 127 1 148016912 148017004 - High
gga-mir-17 MI0001184 961 1 148017067 148017151 - High
gga-mir-16-1 MI0001185 392 1 169278262 169278345 - High
gga-mir-15a MI0001186 73 1 169278404 169278486 - High
gga-mir-1a-2 MI0001196 76776 2 102137096 102137180 - High
gga-mir-206 MI0001207 62 3 107387543 107387618 - -
gga-mir-223 MI0001208 20 4 221057 221156 + High
gga-mir-106 MI0001210 190 4 3924464 3924544 - High
gga-mir-302a MI0001211 0 4 56602240 56602306 + High
gga-mir-181a-1 MI0001218 15585 8 2003508 2003611 + High
gga-mir-181b-1 MI0001219 2028 8 2003697 2003785 + High
gga-mir-16-2 MI0001222 387 9 21896945 21897038 - High
gga-mir-15b MI0001223 27 9 21897120 21897210 - High
gga-mir-140 MI0001229 10668 11 18715847 18715941 + High
gga-let-7g MI0001230 4570 12 3165799 3165881 - High
gga-let-7d MI0001232 130 12 6270254 6270356 - High
gga-let-7f MI0001233 33796 12 6271298 6271384 - High
gga-let-7a-1 MI0001234 72969 12 6271723 6271812 - High
gga-mir-146a MI0001235 1662 13 7417830 7417928 - High
gga-mir-181b-2 MI0001242 2007 17 10106444 10106528 + High
gga-mir-181a-2 MI0001243 15346 17 10104804 10104894 + High
gga-mir-1a-1 MI0001247 76765 20 8467375 8467445 + High
gga-mir-1b MI0001254 1405 23 4704306 4704369 + High
gga-let-7a-2 MI0001259 72699 24 3398596 3398667 + High
gga-mir-34b MI0001260 299 24 5595341 5595424 + High
gga-mir-34c MI0001261 771 24 5596079 5596152 + High
gga-let-7j MI0001262 73377 26 1686090 1686172 - High
gga-let-7k MI0001263 40055 26 1686290 1686372 - High
gga-mir-23b MI0001273 268 Z 42260012 42260097 + High
gga-mir-27b MI0001274 1634 Z 42260248 42260344 + High
gga-mir-24-1 MI0001275 1785 Z 42260781 42260848 + High
gga-mir-122-1 MI0001277 771 Z 1089910 1089986 + High
gga-mir-122-2 MI0001280 771 W 7599933 7600009 - High
hsa-mir-429 MI0001641 318 chr1 1169005 1169087 + High
hsa-mir-449a MI0001648 127 chr5 55170532 55170622 - High
hsa-mir-146b MI0003129 1123 chr10 102436512 102436584 + High
hsa-mir-507 MI0003194 33 chrX 147230984 147231077 - -
hsa-mir-455 MI0003513 927 chr9 114209434 114209529 + High
hsa-mir-92b MI0003560 954 chr1 155195177 155195272 + High
hsa-mir-449b MI0003673 514 chr5 55170646 55170742 - High
gga-mir-146b MI0003695 4181 6 23929095 23929199 + High
gga-mir-302b MI0003700 0 4 56601675 56601746 + Medium
gga-mir-302c MI0003701 0 4 56601937 56602001 + -
gga-mir-302d MI0003702 0 4 56602575 56602643 + High
gga-mir-455 MI0003707 57 17 5377592 5377677 + High
gga-mir-367 MI0003712 0 4 56602711 56602783 + -
gga-mir-429 MI0003714 421 21 2588623 2588706 - High
gga-mir-449a MI0003715 3 Z 17243277 17243362 - -
hsa-mir-449c MI0003823 35 chr5 55172262 55172353 - High
gga-mir-21 MI0004994 34970 19 7850810 7850906 + High
gga-mir-1458 MI0007063 0 9 10325215 10325322 + -
gga-mir-1576 MI0007302 0 13 17544801 17544895 + -
gga-mir-1612 MI0007340 0 9 4639488 4639570 + Medium
gga-mir-1636 MI0007366 0 15 4710939 4711026 + High
gga-mir-449c MI0007445 1 Z 17244436 17244507 - High
gga-mir-1711 MI0007448 0 12 16591041 16591108 - -
gga-mir-1729 MI0007468 39 15 784180 784250 + High
gga-mir-1798 MI0007542 1 20 10022190 10022285 - High
gga-mir-122b-3 MI0007547 0 4 58227347 58227423 - -
gga-mir-1811 MI0007556 0 4 56602059 56602139 + -
gga-mir-146c MI0007561 28908 4 88337567 88337695 - High
gga-mir-15c MI0007562 37 4 4001176 4001251 - High
gga-mir-449b MI0007566 3 Z 17243427 17243520 - High
gga-mir-222b MI0022373 100 4 2125543 2125653 + -
gga-mir-92-2 MI0029335 1214 4 3923873 3923953 - High
gga-mir-125b-1 MI0029337 6039 24 3416223 3416314 + Medium
gga-mir-449d MI0039506 14 Z 17242411 17242493 - High
gga-let-7l-1 MI0040762 1540 AADN04005513.1 10244 10320 - High
gga-let-7l-2 MI0040769 1540 AADN04020204.1 2008 2088 - High
gga-mir-122b-1 MI0040772 0 W 7599946 7600003 + High
gga-mir-122b-2 MI0040778 0 Z 1089918 1089973 - High



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