Stem-loop gga-mir-1a-1

Accession

MI0001247

Description

Gallus gallus gga-mir-1a-1 precursor miRNA

Literature search

26 open access papers mention gga-mir-1a-1
(197 sentences)

Sequence

25851201 reads, 10314.0 reads per million, 257 experiments

ugagagACAUACUUCUUUAUAUGCCCAUAUGaaccuggcaaucuaUGGAAUGUAAAGAAGUAUGUAUUuca
(((((.((((((((((((((((..(((((.((.........))))))).)))))))))))))))).)))))

Structure

     g                GC     U  acc 
ugaga ACAUACUUCUUUAUAU  CCAUA Ga   u
||||| ||||||||||||||||  ||||| ||   g
acuUU UGUAUGAAGAAAUGUA  GGUau cu   g
     A                -A     -  aac 

Annotation confidence High

Genome context

20: 8467375-8467445 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1a-1

Mature gga-miR-1a-1-5p

• Accession: MIMAT0031071
• Description: Gallus gallus gga-miR-1a-1-5p mature miRNA
• Sequence: 7 - ACAUACUUCUUUAUAUGCCCAUAUG - 31
• Evidence: experimental ; Illumina [2]

Mature gga-miR-1a-3p

• Accession: MIMAT0001127
• Description: Gallus gallus gga-miR-1a-3p mature miRNA
• Sequence: 46 - UGGAAUGUAAAGAAGUAUGUAUU - 68
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45