Stem-loop gga-let-7f

Accession

MI0001233

Description

Gallus gallus gga-let-7f precursor miRNA

Literature search

49 open access papers mention gga-let-7f
(253 sentences)

Sequence

2457344 reads, 33791 reads per million, 5 experiments

ucagagUGAGGUAGUAGAUUGUAUAGUUguaggguaguuauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCCuga
((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))

Structure

    a U                       ---------       u 
ucag g GAGGUAGUAGAUUGUAUAGUUgu         aggguag u
|||| | |||||||||||||||||||||||         ||||||| a
aguC C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
    - C                       gaggacuug       u 

Annotation confidence High

Genome context

chr12: 6092103-6092189 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-let-7f

Mature gga-let-7f-5p

• Accession: MIMAT0001162
• Description: Gallus gallus gga-let-7f-5p mature miRNA
• Sequence: 7 - UGAGGUAGUAGAUUGUAUAGUU - 28
• Evidence: experimental ; Illumina [2]

Mature gga-let-7f-3p

• Accession: MIMAT0026528
• Description: Gallus gallus gga-let-7f-3p mature miRNA
• Sequence: 63 - CUAUACAAUCUAUUGCCUUCCC - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45