miRBase entry: gga-mir-221

Stem-loop gga-mir-221

Accession

MI0001178

Description

Gallus gallus gga-mir-221 precursor miRNA mir-221

Gene
family?

RF00651; mir-221

Literature search

23 open access papers mention gga-mir-221
(141 sentences)

Sequence

84383 reads, 916 reads per million, 5 experiments

gacuguccagguuuggggcaugAACCUGGCAUACAAUGUAGAUUUCUGUguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUCcagcugccuggaa
.....(((((((....((...((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))))))....))))))).

Structure

gacug       uugg  cau          U         AUUU    -    g 
     uccaggu    gg   gAACCUGGCA ACAAUGUAG    CUGU guuu  
     |||||||    ||   |||||||||| |||||||||    |||| |||| u
     agguccg    cC   UUUGGGUCGU UGUUACAUC    GAca cgaa  
----a       ucga  ---          C         ----    a    u

Annotation confidence High

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Genome context

chr1: 110650534-110650632 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gga-miR-221-3p

Accession	MIMAT0001108
Description	Gallus gallus gga-miR-221-3p mature miRNA
Sequence	64 - AGCUACAUUGUCUGCUGGGUUUC - 86
Evidence	experimental cloned [2], Illumina [3]
Database links
Predicted targets

Mature gga-miR-221-5p

Accession	MIMAT0026494
Description	Gallus gallus gga-miR-221-5p mature miRNA
Sequence	23 - AACCUGGCAUACAAUGUAGAUUUCUGU - 49
Evidence	experimental Illumina [3]
Database links
Predicted targets

References

PubMed ID: 15592404
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
"International Chicken Genome Sequencing Consortium"
"Nature (2004) 432:695-716

PubMed ID: 18256158
MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
"Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
"J Virol (2008) 82:4007-4015

"McBride D, Carre W, Law A, Clinton M"
(None) None:

PubMed ID: 23034410
Birth and expression evolution of mammalian microRNA genes
"Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
"Genome Res (2013) 23:34-45