miRBase entry: 18256158

MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs

PubMed ID 18256158
Authors "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
Journal "J Virol
Volume 82
Pages 4007-4015

There are 63 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
gga-mir-29b-1 MI0001167 238 1 3978160 3978240 + High
gga-let-7i MI0001168 753 1 33188029 33188112 + High
gga-mir-33-1 MI0001170 294 1 49535021 49535089 - High
gga-let-7a-3 MI0001171 73726 1 71281767 71281842 + High
gga-mir-222a MI0001177 415 1 110728187 110728284 + High
gga-mir-221 MI0001178 930 1 110728691 110728789 + High
gga-mir-92-1 MI0001179 1297 1 148016356 148016433 - High
gga-mir-19b-1 MI0001180 125 1 148016469 148016555 - High
gga-mir-20a MI0001181 1777 1 148016592 148016689 - High
gga-mir-19a MI0001182 109 1 148016778 148016858 - High
gga-mir-18a MI0001183 127 1 148016912 148017004 - High
gga-mir-17 MI0001184 961 1 148017067 148017151 - High
gga-mir-16-1 MI0001185 392 1 169278262 169278345 - High
gga-mir-15a MI0001186 73 1 169278404 169278486 - High
gga-mir-26a-1 MI0001187 8541 2 4564827 4564903 + High
gga-mir-30d MI0001198 16716 2 141645674 141645737 - High
gga-mir-30b MI0001199 267 2 141642135 141642221 - High
gga-mir-30a MI0001204 21107 3 82034731 82034802 + High
gga-mir-30c-2 MI0001205 1744 3 82059667 82059738 + High
gga-mir-18b MI0001209 27 4 3924333 3924416 - High
gga-mir-106 MI0001210 190 4 3924464 3924544 - High
gga-mir-181a-1 MI0001218 15585 8 2003508 2003611 + High
gga-mir-181b-1 MI0001219 2028 8 2003697 2003785 + High
gga-mir-16-2 MI0001222 387 9 21896945 21897038 - High
gga-mir-15b MI0001223 27 9 21897120 21897210 - High
gga-mir-7-2 MI0001226 440 10 13148090 13148188 - High
gga-mir-140 MI0001229 10668 11 18715847 18715941 + High
gga-let-7a-1 MI0001234 72969 12 6271723 6271812 - High
gga-mir-301a MI0001240 13 15 428096 428188 - High
gga-mir-130a MI0001241 115 15 429321 429403 - High
gga-mir-181b-2 MI0001242 2007 17 10106444 10106528 + High
gga-mir-181a-2 MI0001243 15346 17 10104804 10104894 + High
gga-mir-34a MI0001251 50 21 3262662 3262770 - High
gga-mir-30c-1 MI0001257 2036 23 5294538 5294626 + High
gga-let-7a-2 MI0001259 72699 24 3398596 3398667 + High
gga-mir-29b-2 MI0001266 253 26 2735622 2735701 - High
gga-mir-7-3 MI0001269 442 28 5324930 5325024 - High
gga-mir-101-1 MI0001270 21064 Z 27926097 27926175 + High
gga-mir-7-1 MI0001272 460 Z 40684974 40685082 - High
gga-mir-23b MI0001273 268 Z 42260012 42260097 + High
gga-mir-27b MI0001274 1634 Z 42260248 42260344 + High
gga-mir-24-1 MI0001275 1785 Z 42260781 42260848 + High
gga-mir-142 MI0001281 1347 19 1034442 1034529 - High
gga-mir-20b MI0001517 396 4 3924152 3924236 - High
gga-mir-146b MI0003695 4181 6 23929095 23929199 + High
gga-mir-21 MI0004994 34970 19 7850810 7850906 + High
gga-mir-456 MI0004997 43 3 31118054 31118165 - High
mdv1-mir-M1 MI0005093 None AF243438.1 4681 4756 - -
mdv1-mir-M2 MI0005094 None AF243438.1 7324 7397 - -
mdv1-mir-M3 MI0005095 None AF243438.1 7476 7545 - -
mdv1-mir-M4 MI0005096 None AF243438.1 7192 7257 - -
mdv1-mir-M5 MI0005097 None AF243438.1 7945 8019 - -
mdv1-mir-M6 MI0005098 None AF243438.1 142321 142440 + -
mdv1-mir-M7 MI0005099 None AF243438.1 142501 142620 + -
mdv1-mir-M8 MI0005100 None AF243438.1 142201 142320 + -
gga-mir-22 MI0006982 988 19 5865710 5865809 - High
gga-mir-454 MI0006984 51 15 421612 421732 - High
mdv1-mir-M9 MI0006987 None AF243438.1 8182 8251 - -
mdv1-mir-M10 MI0006988 None AF243438.1 142625 142693 + -
mdv1-mir-M11 MI0006989 None AF243438.1 5506 5570 - -
mdv1-mir-M12 MI0006990 None AF243438.1 7671 7732 - -
mdv1-mir-M13 MI0006991 None AF243438.1 176107 176167 - -
gga-mir-101-2 MI0007558 20517 8 27947814 27947889 - High



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