Stem-loop gga-mir-27b

Accession

MI0001274

Description

Gallus gallus gga-mir-27b precursor miRNA mir-27

Gene
family

RF00644; mir-27

Literature search

17 open access papers mention gga-mir-27b
(35 sentences)

Sequence

143524 reads, 1634 reads per million, 5 experiments

accucucuggugaggugcAGAGCUUAGCUGAUUGGUGAACAgugauuguuucccucuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaaggug
((((((((....(((((((((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))))))))..)))).)))).

Structure

-    -    ggug                 G    G       u  uug 
 accu cucu    aggugcAGAGCUUAGCU AUUG UGAACAg ga   u
 |||| ||||    ||||||||||||||||| |||| ||||||| ||   u
 ugga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu cu   u
g    a    --ag                 -    -       u  ccc 

Annotation confidence High

Genome context

chrZ: 41649402-41649498 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-27b

Mature gga-miR-27b-3p

• Accession: MIMAT0001187
• Description: Gallus gallus gga-miR-27b-3p mature miRNA
• Sequence: 61 - UUCACAGUGGCUAAGUUCUGC - 81
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-27b-5p

• Accession: MIMAT0026547
• Description: Gallus gallus gga-miR-27b-5p mature miRNA
• Sequence: 19 - AGAGCUUAGCUGAUUGGUGAACA - 41
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45