Stem-loop gga-mir-30d

Accession

MI0001198

Description

Gallus gallus gga-mir-30d precursor miRNA

Literature search

47 open access papers mention gga-mir-30d
(97 sentences)

Sequence

28788367 reads, 16962.0 reads per million, 260 experiments

guugcUGUAAACAUCCCCGACUGGAAGCUGuagcagcuugagCUUUCAGUCAGAUGUUUGCUGC
...((.(((((((((...(((((((((((..((...))..))))))))))).))))))))).))

Structure

guu  U         CCC           Gu  c 
   gc GUAAACAUC   GACUGGAAGCU  ag  
   || |||||||||   |||||||||||  || a
   CG CGUUUGUAG   CUGACUUUCga  uc  
---  U         --A           gu  g 

Annotation confidence High

Genome context

2: 141645674-141645737 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-30d

Mature gga-miR-30d-5p

• Accession: MIMAT0001129
• Description: Gallus gallus gga-miR-30d-5p mature miRNA
• Sequence: 6 - UGUAAACAUCCCCGACUGGAAGCUG - 30
• Evidence: experimental ; cloned [2]

Mature gga-miR-30d-3p

• Accession: MIMAT0061067
• Description: Gallus gallus gga-miR-30d-3p mature miRNA
• Sequence: 43 - CUUUCAGUCAGAUGUUUGCUGC - 64
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None: