Stem-loop gga-mir-30d

Accession

MI0001198

Description

Gallus gallus gga-mir-30d precursor miRNA

Literature search

23 open access papers mention gga-mir-30d
(65 sentences)

Sequence

1240204 reads, 16708 reads per million, 5 experiments

guugcUGUAAACAUCCCCGACUGGAAGcuguagcagcuugagcuuucagucagauguuugcugc
...((.(((((((((...(((((((((((..((...))..))))))))))).))))))))).))

Structure

guu  U         CCC           gu  c 
   gc GUAAACAUC   GACUGGAAGcu  ag  
   || |||||||||   |||||||||||  || a
   cg cguuuguag   cugacuuucga  uc  
---  u         --a           gu  g 

Annotation confidence High

Genome context

chr2: 142761260-142761323 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-30d

Mature gga-miR-30d

• Accession: MIMAT0001129
• Description: Gallus gallus gga-miR-30d mature miRNA
• Sequence: 6 - UGUAAACAUCCCCGACUGGAAG - 27
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None: