Stem-loop gga-mir-456

Accession

MI0004997

Description

Gallus gallus gga-mir-456 precursor miRNA mir-456

Gene
family

RF00878; mir-456

Literature search

1 open access papers mention gga-mir-456
(1 sentences)

Sequence

1143015 reads, 731.0 reads per million, 242 experiments

auuuaagcugcugugugugugcgugugugaGCAGGCAUCUUCUCAGCCUACAUGuggauuccuaaaucugCAGGCUGGUUAGAUGGUUGUCaugcauucaucugauaacugc
......((.(.(((....(((.((((((((.(((.(((((..(((((((....(((((((....))))))))))))))..))))).))))))))))).)))...))).).))

Structure

auuuaa  u c   gugu   c        G   G     UC       ACAU       c 
      gc g ugu    gug guguguga CAG CAUCU  UCAGCCU    Guggauu c
      || | |||    ||| |||||||| ||| |||||  |||||||    |||||||  
      cg c aua    uac uacguaCU GUU GUAGA  GGUCGGA    Cgucuaa u
------  u a   -guc   u        -   G     UU       ----       a 

Annotation confidence High

Genome context

3: 31118054-31118165 [-]

Mature gga-miR-456-5p

• Accession: MIMAT0026645
• Description: Gallus gallus gga-miR-456-5p mature miRNA
• Sequence: 31 - GCAGGCAUCUUCUCAGCCUACAUG - 54
• Evidence: experimental ; Illumina [3]

Mature gga-miR-456-3p

• Accession: MIMAT0003777
• Description: Gallus gallus gga-miR-456-3p mature miRNA
• Sequence: 71 - CAGGCUGGUUAGAUGGUUGUC - 91
• Evidence: experimental ; cloned [1-2], Northern [1], Illumina [3]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45