Stem-loop gga-mir-140

Accession

MI0001229

Description

Gallus gallus gga-mir-140 precursor miRNA mir-140

Gene
family

RF00678; mir-140

Literature search

42 open access papers mention gga-mir-140
(192 sentences)

Sequence

7190653 reads, 3428.0 reads per million, 260 experiments

ugcgucucuccguguccugcCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucuACCACAGGGUAGAACCACGGACgggaugccggggc
.......((((((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).))))))).))))).

Structure

ugcgucu     -       -  A             A       u  c  c 
       cuccg uguccug cC GUGGUUUUACCCU UGGUAGg ua gu  
       ||||| ||||||| || ||||||||||||| ||||||| || || a
       ggggc guagggC GG CACCAAGAUGGGA ACCAucu gu cg  
------c     c       A  -             C       u  -  u 

Annotation confidence High

Genome context

11: 18715847-18715941 [+]

Mature gga-miR-140-5p

• Accession: MIMAT0001159
• Description: Gallus gallus gga-miR-140-5p mature miRNA
• Sequence: 21 - CAGUGGUUUUACCCUAUGGUAG - 42
• Evidence: experimental ; cloned [3]

Mature gga-miR-140-3p

• Accession: MIMAT0003722
• Description: Gallus gallus gga-miR-140-3p mature miRNA
• Sequence: 61 - ACCACAGGGUAGAACCACGGAC - 82
• Evidence: experimental ; cloned [2], Northern [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616