Stem-loop gga-mir-30c-1

Accession

MI0001257

Description

Gallus gallus gga-mir-30c-1 precursor miRNA

Literature search

23 open access papers mention gga-mir-30c-1
(64 sentences)

Sequence

13888201 reads, 8363.0 reads per million, 258 experiments

accaugcuguagcacgUGUAAACAUCCUACACUCUCAGCUGugaacucgagguggCUGGGAGAGGAUUGUUUACGCCUUcugccaugga
.(((((..((((...(((((((((((((...(((((((((....(((...)))))))))))))))).)))))))))...))))))))).

Structure

a     cu    cac         -    ACA         Guga   c 
 ccaug  guag   gUGUAAACA UCCU   CUCUCAGCU    acu  
 |||||  ||||   ||||||||| ||||   |||||||||    ||| g
 gguac  cguc   CGCAUUUGU AGGA   GAGGGUCgg    ugg  
a     --    UUC         U    ---         ----   a 

Annotation confidence High

Genome context

23: 5294538-5294626 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-30c-1

Mature gga-miR-30c-5p

• Accession: MIMAT0001137
• Description: Gallus gallus gga-miR-30c-5p mature miRNA
• Sequence: 17 - UGUAAACAUCCUACACUCUCAGCUG - 41
• Evidence: experimental ; cloned [2-3], Northern [2], Illumina [4]

Mature gga-miR-30c-1-3p

• Accession: MIMAT0031105
• Description: Gallus gallus gga-miR-30c-1-3p mature miRNA
• Sequence: 56 - CUGGGAGAGGAUUGUUUACGCCUU - 79
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616


5. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45