Stem-loop gga-mir-181b-1

Accession

MI0001219

Description

Gallus gallus gga-mir-181b-1 precursor miRNA

Literature search

13 open access papers mention gga-mir-181b-1
(36 sentences)

Sequence

182014 reads, 2017 reads per million, 5 experiments

aaaaggucacaaucAACAUUCAUUGCUGUCGGUGGGuuuaacuauguggacaagcUCACUGAACAAUGAAUGCAACuguggccccacau
....(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))))))......

Structure

--aaaa       aucAA         CUG           aa  a 
      ggucaca     CAUUCAUUG   UCGGUGGGuuu  cu u
      |||||||     |||||||||   |||||||||||  ||  
      ccggugu     GUAAGUAAC   AGUCACUcgaa  gg g
uacacc       -CAAC         --A           ca  u 

Annotation confidence Medium

Genome context

chr8: 2005358-2005446 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-181b-1

Mature gga-miR-181b-5p

• Accession: MIMAT0001151
• Description: Gallus gallus gga-miR-181b-5p mature miRNA
• Sequence: 15 - AACAUUCAUUGCUGUCGGUGGG - 36
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-181b-1-3p

• Accession: MIMAT0026522
• Description: Gallus gallus gga-miR-181b-1-3p mature miRNA
• Sequence: 56 - UCACUGAACAAUGAAUGCAAC - 76
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45