Stem-loop gga-mir-22

Accession

MI0006982

Description

Gallus gallus gga-mir-22 precursor miRNA mir-22

Gene
family

RF00653; mir-22

Literature search

12 open access papers mention gga-mir-22
(26 sentences)

Sequence

75979 reads, 985 reads per million, 5 experiments

gcuccuggcugcccggcagcAGUUCUUCAGUGGCAAGCUUUAuguccuucucuaguagcuaAAGCUGCCAGUUGAAGAACUGUugaauguagccacguuc
.....(((((((....(((((((((((((((((((.((((((..(.((.....)).)..))))))))))).))))))))))))))...))))))).....

Structure

gcucc       ccgg              -     A      ug c  u 
     uggcugc    cagcAGUUCUUCAG UGGCA GCUUUA  u cu c
     |||||||    |||||||||||||| ||||| ||||||  | || u
     accgaug    guUGUCAAGAAGUU ACCGU CGAAau  a ga c
cuugc       -uaa              G     -      cg u  u 

Annotation confidence High

Genome context

chr19: 5380348-5380447 [-]

Mature gga-miR-22-5p

• Accession: MIMAT0007287
• Description: Gallus gallus gga-miR-22-5p mature miRNA
• Sequence: 21 - AGUUCUUCAGUGGCAAGCUUUA - 42
• Evidence: experimental ; cloned [1], Northern [3], Illumina [4]

Mature gga-miR-22-3p

• Accession: MIMAT0007288
• Description: Gallus gallus gga-miR-22-3p mature miRNA
• Sequence: 62 - AAGCUGCCAGUUGAAGAACUGU - 83
• Evidence: experimental ; cloned [1-2], Northern [3], Illumina [4]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


3. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


4. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964