Stem-loop gga-mir-101-2

Accession

MI0007558

Description

Gallus gallus gga-mir-101-2 precursor miRNA

Literature search

15 open access papers mention gga-mir-101-2
(228 sentences)

Sequence

1422657 reads, 20511 reads per million, 5 experiments

gcugcccuggcUCAGUUAUCACAGUGCUGAUGCUgucucuuguaaagGUACAGUACUGUGAUAACUGAAggauggc
((((.(((...((((((((((((((((((.((((............))))))))))))))))))))))))).))))

Structure

    c   ggc                  A    gucuc 
gcug ccu   UCAGUUAUCACAGUGCUG UGCU     u
|||| |||   |||||||||||||||||| ||||      
cggu ggA   AGUCAAUAGUGUCAUGAC AUGg     u
    a   ---                  -    aaaug 

Annotation confidence High

Genome context

chr8: 28360430-28360505 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-101-2

Mature gga-miR-101-3p

• Accession: MIMAT0001185
• Description: Gallus gallus gga-miR-101-3p mature miRNA
• Sequence: 48 - GUACAGUACUGUGAUAACUGAA - 69
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature gga-miR-101-2-5p

• Accession: MIMAT0031077
• Description: Gallus gallus gga-miR-101-2-5p mature miRNA
• Sequence: 12 - UCAGUUAUCACAGUGCUGAUGCU - 34
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45