Stem-loop gga-mir-15a

Accession

MI0001186

Description

Gallus gallus gga-mir-15a precursor miRNA mir-15

Gene
family

RF00455; mir-15

Literature search

17 open access papers mention gga-mir-15a
(158 sentences)

Sequence

5939 reads, 73 reads per million, 5 experiments

ccuuggcauaacgUAGCAGCACAUAAUGGUUUGUggguuuugaaaaggugcaggccauauugugcugccucaaaaauacaagg
(((((.......(..((((((((..((((((((((.............))))))))))..))))))))..).......)))))

Structure

     gcauaac UA        UA          gguuu 
ccuug       g  GCAGCACA  AUGGUUUGUg     u
|||||       |  ||||||||  ||||||||||     g
ggaac       c  cgucgugu  uaccggacgu     a
     auaaaaa uc        ua          ggaaa 

Annotation confidence Not enough data

Genome context

chr1: 169399193-169399275 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-15a

Mature gga-miR-15a

• Accession: MIMAT0001117
• Description: Gallus gallus gga-miR-15a mature miRNA
• Sequence: 14 - UAGCAGCACAUAAUGGUUUGU - 34
• Evidence: experimental ; cloned [2-3], Northern [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616