Stem-loop gga-mir-15a

Accession

MI0001186

Description

Gallus gallus gga-mir-15a precursor miRNA mir-15

Gene
family

RF00455; mir-15

Literature search

52 open access papers mention gga-mir-15a
(290 sentences)

Sequence

2164356 reads, 1197.0 reads per million, 254 experiments

ccuuggcauaacgUAGCAGCACAUAAUGGUUUGUGgguuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCAaaaauacaagg
(((((.......(..((((((((..((((((((((.............))))))))))..))))))))..).......)))))

Structure

     gcauaac UA        UA          gguuu 
ccuug       g  GCAGCACA  AUGGUUUGUG     u
|||||       |  ||||||||  ||||||||||     g
ggaac       C  CGUCGUGU  UACCGGACgu     a
     auaaaaA UC        UA          ggaaa 

Annotation confidence High

Genome context

1: 169278404-169278486 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-15a

Mature gga-miR-15a-5p

• Accession: MIMAT0001117
• Description: Gallus gallus gga-miR-15a-5p mature miRNA
• Sequence: 14 - UAGCAGCACAUAAUGGUUUGUG - 35
• Evidence: experimental ; cloned [2-3], Northern [2]

Mature gga-miR-15a-3p

• Accession: MIMAT0051202
• Description: Gallus gallus gga-miR-15a-3p mature miRNA
• Sequence: 51 - CAGGCCAUAUUGUGCUGCCUCA - 72
• Evidence: experimental ; cloned [2-3], Northern [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616