Stem-loop mdv1-mir-M12

Accession

MI0006990

Description

Mareks disease virus type 1 mdv1-mir-M12 precursor miRNA

Sequence

gaucaAGGCCCUCCGUAUAAUGUAAAUGUccaaagguuUGCAUAAUACGGAGGGUUCUgauc
(((((.((((((((((((.((((((((........)))))))).)))))))))))).)))))

Structure

     A            A        GUc 
gauca GGCCCUCCGUAU AUGUAAAU   c
||||| |||||||||||| ||||||||    
cuagU UUGGGAGGCAUA UACGUuug   a
     C            A        gaa 

Annotation confidence Not enough data

Genome context

AF243438.1: 7671-7732 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from mdv1-mir-M12

Mature mdv1-miR-M12-5p

• Accession: MIMAT0009209
• Description: Mareks disease virus type 1 mdv1-miR-M12-5p mature miRNA
• Sequence: 6 - AGGCCCUCCGUAUAAUGUAAAUGU - 29
• Evidence: experimental ; Illumina [3]

Mature mdv1-miR-M12-3p

• Accession: MIMAT0005984
• Description: Mareks disease virus type 1 mdv1-miR-M12-3p mature miRNA
• Sequence: 39 - UGCAUAAUACGGAGGGUUCU - 58
• Evidence: experimental ; cloned [1-2], Northern [1], Illumina [3]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. PubMed ID: 18430245
   Deep sequencing of chicken microRNAs
   Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
   BMC Genomics (2008) 9:185


3. PubMed ID: 18842708
   Sequence conservation and differential expression of Marek's disease virus microRNAs
   "Morgan R, Anderson A, Bernberg E, Kamboj S, Huang E, Lagasse G, Isaacs G, Parcells M, Meyers BC, Green PJ, Burnside J"
   "J Virol (2008) 82:12213-12220