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Deep sequencing of chicken microRNAs |
|
|---|---|
| PubMed ID | 18430245 |
| Authors | Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW |
| Journal | BMC Genomics |
| Volume | 9 |
| Pages | 185 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| mdv1-mir-M1 | MI0005093 | None | AF243438.1 | 4681 | 4756 | - | - |
| mdv1-mir-M2 | MI0005094 | None | AF243438.1 | 7324 | 7397 | - | - |
| mdv1-mir-M3 | MI0005095 | None | AF243438.1 | 7476 | 7545 | - | - |
| mdv1-mir-M4 | MI0005096 | None | AF243438.1 | 7192 | 7257 | - | - |
| mdv1-mir-M5 | MI0005097 | None | AF243438.1 | 7945 | 8019 | - | - |
| mdv1-mir-M6 | MI0005098 | None | AF243438.1 | 142321 | 142440 | + | - |
| mdv1-mir-M7 | MI0005099 | None | AF243438.1 | 142501 | 142620 | + | - |
| mdv1-mir-M8 | MI0005100 | None | AF243438.1 | 142201 | 142320 | + | - |
| gga-mir-1329 | MI0006979 | 708 | 3 | 96609544 | 96609638 | + | High |
| gga-mir-1416 | MI0006981 | 62 | Z | 35534429 | 35534517 | + | High |
| mdv1-mir-M10 | MI0006988 | None | AF243438.1 | 142625 | 142693 | + | - |
| mdv1-mir-M12 | MI0006990 | None | AF243438.1 | 7671 | 7732 | - | - |
| gga-mir-1451 | MI0007054 | 93 | 3 | 75688512 | 75688621 | + | High |
| gga-mir-460b | MI0007055 | 1253 | 4 | 2655524 | 2655613 | + | High |
| gga-mir-1452 | MI0007056 | 1 | Z | 67130788 | 67130865 | + | High |
| gga-mir-1453 | MI0007058 | 0 | 20 | 1731490 | 1731563 | - | - |
| gga-mir-1454 | MI0007059 | 13 | 3 | 56449342 | 56449441 | - | - |
| gga-mir-1456 | MI0007061 | 26 | Z | 45511708 | 45511817 | - | High |
| gga-mir-1457 | MI0007062 | 179 | 2 | 136069042 | 136069128 | - | High |
| gga-mir-1458 | MI0007063 | 0 | 9 | 10325215 | 10325322 | + | - |
| gga-mir-1459 | MI0007064 | 0 | Z | 67133981 | 67134065 | + | - |
| gga-mir-1460 | MI0007065 | None | 1 | 7543504 | 7543600 | - | - |
| gga-mir-216c | MI0007066 | 18 | 3 | 411723 | 411808 | + | High |
| gga-mir-1462 | MI0007067 | 2 | 4 | 8466135 | 8466244 | - | Medium |
| gga-mir-1463 | MI0007068 | 0 | 5 | 9872753 | 9872862 | - | - |
| gga-mir-1464 | MI0007069 | 0 | 15 | 11441472 | 11441581 | + | Medium |
| gga-mir-1465 | MI0007070 | 0 | 17 | 8776326 | 8776435 | + | - |
| gga-mir-1466 | MI0007071 | 0 | 24 | 4232073 | 4232180 | + | - |
| gga-mir-1467-1 | MI0007072 | 2 | 2 | 134915018 | 134915127 | - | High |
| mdv1-mir-M31 | MI0008337 | None | AF243438.1 | 5013 | 5081 | - | - |
| gga-mir-1467-2 | MI0023550 | 2 | 2 | 134915018 | 134915127 | - | High |
| gga-mir-1306 | MI0007057 | 13 | 15 | 1309175 | 1309243 | + | High |
| gga-mir-29a | MI0001166 | 670 | 1 | 3979177 | 3979265 | + | High |
| gga-mir-29b-1 | MI0001167 | 238 | 1 | 3978160 | 3978240 | + | High |
| gga-let-7i | MI0001168 | 753 | 1 | 33188029 | 33188112 | + | High |
| gga-let-7a-3 | MI0001171 | 73726 | 1 | 71281767 | 71281842 | + | High |
| gga-let-7b | MI0001172 | 13203 | 1 | 71282596 | 71282680 | + | High |
| gga-let-7c | MI0001174 | 12632 | 1 | 99155964 | 99156047 | + | High |
| gga-mir-125b-2 | MI0001175 | 6293 | 1 | 99187944 | 99188033 | + | High |
| gga-mir-222a | MI0001177 | 415 | 1 | 110728187 | 110728284 | + | High |
| gga-mir-221 | MI0001178 | 930 | 1 | 110728691 | 110728789 | + | High |
| gga-mir-16-1 | MI0001185 | 392 | 1 | 169278262 | 169278345 | - | High |
| gga-mir-196-2 | MI0001190 | 1901 | 2 | 32553100 | 32553193 | - | High |
| gga-mir-16-2 | MI0001222 | 387 | 9 | 21896945 | 21897038 | - | High |
| gga-mir-7-2 | MI0001226 | 440 | 10 | 13148090 | 13148188 | - | High |
| gga-let-7g | MI0001230 | 4570 | 12 | 3165799 | 3165881 | - | High |
| gga-let-7d | MI0001232 | 130 | 12 | 6270254 | 6270356 | - | High |
| gga-let-7f | MI0001233 | 33796 | 12 | 6271298 | 6271384 | - | High |
| gga-let-7a-1 | MI0001234 | 72969 | 12 | 6271723 | 6271812 | - | High |
| gga-let-7a-2 | MI0001259 | 72699 | 24 | 3398596 | 3398667 | + | High |
| gga-let-7j | MI0001262 | 73377 | 26 | 1686090 | 1686172 | - | High |
| gga-let-7k | MI0001263 | 40055 | 26 | 1686290 | 1686372 | - | High |
| gga-mir-29b-2 | MI0001266 | 253 | 26 | 2735622 | 2735701 | - | High |
| gga-mir-196-1 | MI0001268 | 2028 | 27 | 3382487 | 3382581 | + | High |
| gga-mir-196-3 | MI0001282 | 2177 | 34 | 856403 | 856510 | - | High |
| gga-mir-21 | MI0004994 | 34970 | 19 | 7850810 | 7850906 | + | High |
| gga-mir-460a | MI0004998 | 424 | 2 | 3683361 | 3683450 | + | High |
| gga-mir-16c | MI0007563 | 2035 | 4 | 4000810 | 4000880 | - | High |
| gga-mir-222b | MI0022373 | 100 | 4 | 2125543 | 2125653 | + | - |
| gga-mir-196-4 | MI0023559 | 1901 | 2 | 32553100 | 32553193 | - | High |
| gga-mir-196-5 | MI0023560 | 1901 | 2 | 32553100 | 32553193 | - | High |
| gga-mir-125b-1 | MI0029337 | 6039 | 24 | 3416223 | 3416314 | + | Medium |
| gga-let-7l-1 | MI0040762 | 1540 | AADN04005513.1 | 10244 | 10320 | - | High |
| gga-let-7l-2 | MI0040769 | 1540 | AADN04020204.1 | 2008 | 2088 | - | High |