Stem-loop gga-mir-216c

Accession

MI0007066

Description

Gallus gallus gga-mir-216c precursor miRNA

Sequence

2177 reads, 24.0 reads per million, 120 experiments

ugccagauuguagaAUCUCUACAGGUAAUUGUGAGAuugcuauaaagacaUCACAUUUGCCUGCAGAGAUUUcccagucugugacu
...(((((((..((((((((.(((((((.(((((..((........))..))))).))))))).))))))))..))))))).....

Structure

--ugc       ua        A       U     GA  gcu 
     cagauug  gaAUCUCU CAGGUAA UGUGA  uu   a
     |||||||  |||||||| ||||||| |||||  ||    
     gucugac  UUUAGAGA GUCCGUU ACACU  ag   u
ucagu       cc        C       U     ac  aaa 

Annotation confidence High

Genome context

3: 411723-411808 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-216c

Mature gga-miR-216c-5p

• Accession: MIMAT0007339
• Description: Gallus gallus gga-miR-216c-5p mature miRNA
• Sequence: 15 - AUCUCUACAGGUAAUUGUGAGA - 36
• Evidence: experimental ; 454 [1]

Mature gga-miR-216c-3p

• Accession: MIMAT0051226
• Description: Gallus gallus gga-miR-216c-3p mature miRNA
• Sequence: 51 - UCACAUUUGCCUGCAGAGAUUU - 72
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18430245
   Deep sequencing of chicken microRNAs
   Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
   BMC Genomics (2008) 9:185